Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014217: Starkeya novella DSM 506 chromosome, complete genome

NCBI: NC_014217

Host Lineage: Starkeya novella; Starkeya; Xanthobacteraceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Temp: 26 - 30C; Habitat: Soil. Starkeya novella is a non-motile soil bacterium that belongs to the facultatively heterotrophic microbes. It is able to grow heterotrophically on a variety of single-carbon compounds, sugar alcohols, amino acids, carboxylic acids, and fatty acids. In addition, it is able to grow chemolithoautotrophically using a variety of inorganic and organic sulfur compounds such as thiosulfate, tetrathionate, dimethylsulfide (DMS), and dimethylsulfoxide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1163984140525008Island text1.4456815.096120.6542Neighbours11BLASTN+IslandViewer 16398.gbk
271650073776321264Island text1.9654619.75719.7268Neighbours11BLASTN+IslandViewer 716500.gbk
380040682559925194Island text1.7761220.478914.9645Neighbours11BLASTN+IslandViewer 800406.gbk
41352777*137649123715Island text1.615617.714413.7933Neighbours11BLASTNIslandViewer 1352777.gbk
52020737204764226906Island text1.6111518.920914.8903Neighbours11BLASTN+IslandViewer 2020737.gbk
62172464*219285920396Island text1.6252120.799918.1021Neighbours11BLASTNIslandViewer 2172464.gbk
72760898280329642399Island text1.9106422.495123.7326Neighbours11BLASTN+IslandViewer 2760898.gbk
82987450301014422695Island text1.4780821.005612.9309Neighbours11BLASTN+IslandViewer 2987450.gbk
93024961*304423219272Island text1.5119417.246316.3743Neighbours11BLASTN+IslandViewer 3024961.gbk
103431878*345778325906Island text3.0117520.92722.4553Neighbours11BLASTN+3431878.gbk
114550544458915738614Island text1.9363720.401220.4082Neighbours11BLASTN+IslandViewer 4550544.gbk
124597426*462121223787Island text1.5823914.728215.3368Neighbours11BLASTN+IslandViewer 4597426.gbk