Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014215: Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,

NCBI: NC_014215

Host Lineage: Propionibacterium freudenreichii; Propionibacterium; Propionibacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Propionibacterium freudenreichii is a member of the "dairy propionibacteria", commonly isolated from cheese and other dairy products. Propionibacterium freudenreichii subsp. shermanii, formerly Propionibacterium shermanii, is important for the development of flavor and the characteristic holes in Swiss cheese. In addition, Propionibacterium freudenreichii subsp. shermanii has been used as a probiotic for humans and animals and may have a role in preventing of colon cancer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114250016776025261Island text1.5793818.900919.8413Neighbours11BLASTN+IslandViewer 142500.gbk
232236234174519384Island text1.609216.670723.0113Neighbours11BLASTN+322362.gbk
334991737916229246Island text1.717420.87918.2826Neighbours11BLASTN+IslandViewer 349917.gbk
442168345090929227Island text1.4030318.239317.3468Neighbours11BLASTN+IslandViewer 421683.gbk
549285551339920545Island text1.6886617.535127.7013Neighbours11BLASTN+IslandViewer 492855.gbk
61190447*121409923653Island text1.4952417.521918.1447Neighbours11BLASTN1190447.gbk
71243125*126864225518Island text2.1753722.523622.5492Neighbours11BLASTN+IslandViewer 1243125.gbk
81841064186318122118Island text1.6844118.287118.7869Neighbours11BLASTN+1841064.gbk
91929000*194714618147Island text1.4910317.272616.3479Neighbours11BLASTN1929000.gbk
102259290228320523916Island text1.7645620.269918.2014Neighbours11BLASTN+IslandViewer 2259290.gbk
112295500232183626337Island text1.8194520.369416.9072Neighbours11BLASTN+IslandViewer 2295500.gbk