Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014212: Meiothermus silvanus DSM 9946 chromosome, complete genome

NCBI: NC_014212

Host Lineage: Meiothermus silvanus; Meiothermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: Isolation: Hot spring; Country: Portugal; Temp: Thermophile; Temp: 50C; Habitat: Hot spring. An aerobic, thermophilic, nonmotile Gram-negative bacterium isolated from the hot spring located at the end of a 450 m tunnel and from thermal water piped to a spa at Vizela in northern Portugal. M. silvanus is of special interest as it causes colored biofilms in the paper making industry and may thus be of economic importance as a biofouler. M. silvanus has also been detected in the gut of an invasive wood-boring beetle and in seawater adjacent to a Pacillopora meandrina coral colony at Palmyra Atoll.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1319815*33968619872Island text1.547718.129930.5173Neighbours11BLASTN+319815.gbk
250144952113119683Island text1.4949917.582721.178Neighbours11IslandViewer 501449.gbk
367099669765826663Island text1.6303219.263317.969Neighbours11BLASTN+IslandViewer 670996.gbk
42776457280199725541Island text2.0018124.098536.4347Neighbours111BLASTN+2776457.gbk
53091571311344421874Island text1.6458320.27329.1235Neighbours11+IslandViewer 3091571.gbk
63206860*322629919440Island text1.5464518.638531.234NeighboursBLASTN+3206860.gbk