Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014211: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid

NCBI: NC_014211

Host Lineage: Nocardiopsis dassonvillei; Nocardiopsis; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 28C; Habitat: Blood, Host; Isolation: blood. This organism is and environmental bacterium which has been known to cause actinomycetoma, skin infections, and pulmunary infections in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1174694*19374819055Island text2.0433613.636918.2726Neighbours11BLASTN174694.gbk
2258659*28488226224Island text1.4967916.050625.6791Neighbours11BLASTN258659.gbk
343961146090921299Island text4.7550115.284523.6316Neighbours11BLASTN+IslandViewer 439611.gbk