Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014210: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,

NCBI: NC_014210

Host Lineage: Nocardiopsis dassonvillei; Nocardiopsis; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 28C; Habitat: Blood, Host; Isolation: blood. This organism is and environmental bacterium which has been known to cause actinomycetoma, skin infections, and pulmunary infections in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114403616380119766Island text1.5418112.825314.8404Neighbours11BLASTN+144036.gbk
2397922*41759919678Island text1.5195712.289617.7397Neighbours11BLASTN+397922.gbk
361850064662528126Island text2.0180116.763312.3588Neighbours11BLASTN+IslandViewer 618500.gbk
472371974915525437Island text2.7498316.735321.3984Neighbours11BLASTN+IslandViewer 723719.gbk
596513098809922970Island text1.6102511.223217.5722Neighbours11BLASTN+965130.gbk
61471752153434662595Island text1.7108816.984831.1335Neighbours11BLASTN1471752.gbk
71588426161009921674Island text2.4034814.783414.8881Neighbours11BLASTN1588426.gbk
81625954164519219239Island text1.7666812.430111.6945Neighbours11BLASTN1625954.gbk
92107738213490427167Island text1.8922412.862819.1294Neighbours11BLASTN2107738.gbk
102277971*230264924679Island text3.8503814.769815.9858Neighbours11BLASTN2277971.gbk
112372813241181239000Island text2.2916521.355536.3112Neighbours11BLASTN+2372813.gbk
122597000263744640447Island text1.9960917.419925.7273Neighbours11BLASTN+IslandViewer 2597000.gbk
132638773266766328891Island text2.4056316.305928.8115Neighbours11BLASTNIslandViewer 2638773.gbk
142747787277340525619Island text2.1242212.463513.0223Neighbours11BLASTN+2747787.gbk
153170537*319436823832Island text2.2313113.826917.2339Neighbours11BLASTN+3170537.gbk
163248526327306124536Island text1.6768813.491919.402Neighbours11BLASTN3248526.gbk
173671495*369312021626Island text2.069612.65412.3401Neighbours11BLASTN3671495.gbk
183742112376235620245Island text2.1628713.876515.5805Neighbours11BLASTN3742112.gbk
193763940*379109927160Island text2.0451415.230721.6386Neighbours11BLASTN+3763940.gbk
203817948384029722350Island text1.5991511.162518.6076Neighbours11BLASTN+3817948.gbk
214053094407559922506Island text1.7936514.247113.3177Neighbours11BLASTN+4053094.gbk
224122514*414859926086Island text2.7347412.65214.8496NeighboursBLASTN+IslandViewer 4122514.gbk
234188448421709828651Island text2.4543915.130620.5355Neighbours11BLASTN+4188448.gbk
244377867*439985221986Island text1.6146715.577120.5156Neighbours11BLASTN+4377867.gbk
254831858*485422422367Island text1.9502812.715821.8419Neighbours11BLASTN+4831858.gbk
265048502507316024659Island text5.0990317.122417.1083Neighbours11BLASTN5048502.gbk
275270643*529559924957Island text2.3700413.44299.24722Neighbours11BLASTN+5270643.gbk
285309121*533359924479Island text2.728713.783310.2547Neighbours11BLASTN5309121.gbk
295370868538907818211Island text1.6763312.168713.1015Neighbours11BLASTN+5370868.gbk
305409324543142122098Island text2.9439211.733912.7604Neighbours11BLASTN5409324.gbk
315683616570702223407Island text1.4126413.223512.4741Neighbours11BLASTN5683616.gbk
325752651*577999927349Island text1.5633210.934512.3584Neighbours11BLASTN5752651.gbk