Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014209: Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,

NCBI: NC_014209

Host Lineage: Thermoanaerobacter mathranii; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Isolation: Hot spring; Country: Iceland; Temp: Thermophile; Temp: 70 - 75C; Habitat: Hot spring. A thermophilic bacterial species of straight rods, occurring singly or sometimes in long chains, motile and Gram variable. Isolated from hot spring, canned foods and dairy products.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
181643*12009938457Island text1.8308323.39435.382Neighbours21BLASTN81643.gbk
2136152*15029614145Island text2.7897925.543245.6213Neighbours21BLASTN136152.gbk
376183278519223361Island text1.7863919.531239.4871Neighbours21BLASTN+761832.gbk
478753581009922565Island text1.8992822.513434.2429Neighbours21BLASTN787535.gbk
51363151*138961426464Island text3.4310936.082443.3291Neighbours21BLASTN+1363151.gbk
61392115*141109918985Island text2.1450422.663935.3494Neighbours21BLASTN+IslandViewer 1392115.gbk
71487699*151184724149Island text2.1132828.399522.9575Neighbours21BLASTN+IslandViewer 1487699.gbk
81580423160056920147Island text1.9478721.920644.9202Neighbours21BLASTN+1580423.gbk
91910109*194573835630Island text3.527231.783346.5579Neighbours21BLASTN+1910109.gbk
102204515222559921085Island text2.4045625.141624.5483Neighbours21BLASTN2204515.gbk
112257316*228561028295Island text2.2501229.363641.9976Neighbours21BLASTN+IslandViewer 2257316.gbk