Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014206: Geobacillus sp. C56-T3 chromosome, complete genome

NCBI: NC_014206

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Geobacillus sp. (strain C56-T3) is a chemoorganotrophic, obligately thermophilic, motile, spore-forming, aerobic or facultatively anaerobic Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1345499*39094945451Island text1.7190435.399446.0836Neighbours31BLASTN+IslandViewer 345499.gbk
2411143*43048419342Island text1.6699335.146645.3638Neighbours31BLASTNIslandViewer 411143.gbk
377176579417822414Island text1.7108934.415543.0518Neighbours31BLASTNIslandViewer 771765.gbk
41202907122823825332Island text1.7312131.828241.4626Neighbours31BLASTN+IslandViewer 1202907.gbk
51467000149083323834Island text1.7061933.109240.1136Neighbours31BLASTN+1467000.gbk
61497942152059922658Island text4.0550241.684619.3992Neighbours31BLASTN+1497942.gbk
71618988164609927112Island text1.5421428.299825.3563Neighbours31BLASTN+IslandViewer 1618988.gbk
81694330172927134942Island text1.6876631.799239.7213Neighbours31BLASTN+IslandViewer 1694330.gbk
91745203177609930897Island text1.6418231.851131.6581Neighbours31BLASTN+IslandViewer 1745203.gbk
102266000228561919620Island text1.9879935.564319.667Neighbours31BLASTN2266000.gbk
112516000255970543706Island text1.7171932.783933.1732Neighbours31BLASTN+IslandViewer 2516000.gbk
122807879282559917721Island text1.6919133.38125.9238Neighbours31BLASTNIslandViewer 2807879.gbk
132912945*293354720603Island text1.6303833.162430.7395Neighbours31BLASTN+2912945.gbk
142941575296915527581Island text1.720131.4936.2971Neighbours31BLASTN+IslandViewer 2941575.gbk
152971304299426622963Island text1.6475732.140436.4416Neighbours31BLASTN+IslandViewer 2971304.gbk
163209500322727217773Island text1.7983635.756731.7944Neighbours31BLASTN+IslandViewer 3209500.gbk
173239403*326281723415Island text1.5057228.864730.7528Neighbours31BLASTNIslandViewer 3239403.gbk
183355156337620221047Island text1.7839435.172532.8638Neighbours31BLASTN3355156.gbk
193391352341569824347Island text1.4975128.058127.0679Neighbours31BLASTN+IslandViewer 3391352.gbk
203468500349518026681Island text1.7422129.3839.6871Neighbours31BLASTNIslandViewer 3468500.gbk