Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014205: Staphylothermus hellenicus DSM 12710 chromosome, complete genome

NCBI: NC_014205

Host Lineage: Staphylothermus hellenicus; Staphylothermus; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Isolation: Shallow hydrothermal vents; Temp: Hyperthermophile; Temp: 85C; Habitat: Fresh water, Hydrothermal vent; Isolation: water from shallow hydrothermal vent. Hyperthermophilic archaeon. Staphylothermus hellenicus was isolated from hydrothermal vent sediment at Palaeochori Bay, Milos, Greece.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117445*3509917655Island text1.551519.494831.5325Neighbours21BLASTN17445.gbk
243900045709918100Island text1.5524322.078728.7124Neighbours21BLASTN439000.gbk
362262764571823092Island text1.6789720.221438.9207Neighbours21BLASTN622627.gbk
476042878106120634Island text1.5319826.510826.1603Neighbours21+IslandViewer 760428.gbk
584231488532243009Island text1.8321622.579938.2089Neighbours21BLASTN+842314.gbk
61257652*128459926948Island text2.7664944.800827.793NeighboursBLASTN+1257652.gbk
71331594*135412522532Island text2.0753319.975141.1987Neighbours21BLASTN1331594.gbk
81364796*138934524550Island text2.3603522.683242.9054Neighbours21BLASTN1364796.gbk
91553530*157834324814Island text2.2327619.257739.006Neighbours21BLASTN1553530.gbk