Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014172: Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence

NCBI: NC_014172

Host Lineage: Bacillus thuringiensis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism, also known as BT, is famous for the production of an insecticidal toxin. The bacterium was initially discovered as a pathogen of various insects and was first used as an insecticidal agent in the early part of this century. This organism, like many other Bacilli, is found in the soil, where it leads a saprophytic existence, but becomes an opportunistic pathogen of insects when ingested.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153815*7720623392Island text2.9187517.789438.9572Neighbours21BLASTN+53815.gbk
210071811917518458Island text2.2221120.397630.4361Neighbours21BLASTN100718.gbk
3166485*20571339229Island text1.6924422.672625.2776Neighbours21BLASTN+166485.gbk
427826030649928240Island text1.5754723.003431.7056Neighbours21BLASTN+278260.gbk