Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014171: Bacillus thuringiensis BMB171 chromosome, complete genome

NCBI: NC_014171

Host Lineage: Bacillus thuringiensis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism, also known as BT, is famous for the production of an insecticidal toxin. The bacterium was initially discovered as a pathogen of various insects and was first used as an insecticidal agent in the early part of this century. This organism, like many other Bacilli, is found in the soil, where it leads a saprophytic existence, but becomes an opportunistic pathogen of insects when ingested.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*4104341043Island text3.1245528.405246.2353Neighbours344BLASTN1.gbk
271963*9898127019Island text5.0224640.65954.9699Neighbours344BLASTN71963.gbk
3109280*16484855569Island text2.0413428.922640.6565BLASTN+109280.gbk
4235558*25940123844Island text4.4405634.226650.5269Neighbours344BLASTN+235558.gbk
526195232595764006Island text3.6355932.288649.2218Neighbours344BLASTN+261952.gbk
6343834*36636422531Island text1.949223.154835.6377Neighbours21BLASTN+343834.gbk
7521996*54167019675Island text4.064830.153249.9415Neighbours344BLASTN+521996.gbk
8723155*74877025616Island text3.1591131.210148.9321Neighbours21BLASTN+723155.gbk
91018338*103902220685Island text1.6713124.61734.3373Neighbours21BLASTN1018338.gbk
101043961106674922789Island text2.408922.276343.5071Neighbours21BLASTN+1043961.gbk
111118000114081922820Island text1.5787424.416332.1416Neighbours21BLASTN1118000.gbk
121356000137893522936Island text1.9063724.051639.1095Neighbours21BLASTN1356000.gbk
132177353220026422912Island text1.6128322.63532.2573Neighbours21BLASTN+2177353.gbk
142350679237202821350Island text1.7522623.799236.8072Neighbours21BLASTNIslandViewer 2350679.gbk
152519767254209922333Island text1.8870723.659440.4373Neighbours21BLASTN+2519767.gbk
163661512*368062919118Island text1.5677222.701835.12Neighbours21BLASTN3661512.gbk
173701051*372595024900Island text1.7268725.893331.003Neighbours21BLASTN3701051.gbk
183726054*374422318170Island text1.5714723.774929.3702Neighbours21BLASTN3726054.gbk
193779956*380505925104Island text1.7857826.145836.2462Neighbours21BLASTN+3779956.gbk
203812247*383035918113Island text1.5800123.838837.4954Neighbours21BLASTN3812247.gbk
214039120405944320324Island text1.6283424.746730.5153Neighbours21BLASTN4039120.gbk
224178746*419867719932Island text1.6077625.617731.8857Neighbours21BLASTN4178746.gbk
234317520*435417836659Island text1.5656723.685231.4074Neighbours21BLASTN4317520.gbk
244447856447057822723Island text1.5466923.817532.1903Neighbours21BLASTN4447856.gbk
254560061*458865328593Island text1.6549324.641338.5796Neighbours21BLASTN4560061.gbk
264681822*470458822767Island text1.6769523.662534.0724Neighbours21BLASTN4681822.gbk
274708282*473620927928Island text3.6446437.762343.2851Neighbours21BLASTN4708282.gbk
284740500476329522796Island text1.6461823.906631.7164Neighbours21BLASTN4740500.gbk
294812340483254720208Island text1.6130125.465434.8867Neighbours21BLASTN4812340.gbk
304933200*495459921400Island text1.6094525.728832.447Neighbours21BLASTN+IslandViewer 4933200.gbk
314959248*499860839361Island text1.6106223.744935.8313Neighbours21BLASTN+4959248.gbk
325068500*508799919500Island text1.755324.139135.4535Neighbours21BLASTN+5068500.gbk
335107956*516328355328Island text1.6226824.583334.3007Neighbours21BLASTN+5107956.gbk