Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014168: Segniliparus rotundus DSM 44985 chromosome, complete genome

NCBI: NC_014168

Host Lineage: Segniliparus rotundus; Segniliparus; Segniliparaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Human sputum; Country: USA; Temp: Mesophile; Temp: 28C. An aerobic, chemoorganotrophic Gram-negative bacterium isolated from human sputum in Tennessee, USA and is probably an opportunistic pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156728*8146324736Island text1.7424319.715632.6648Neighbours11BLASTN+IslandViewer 56728.gbk
222422724735523129Island text2.0213622.843337.0059Neighbours11+224227.gbk
3471000*49425123252Island text1.7433520.729222.3131Neighbours11BLASTN471000.gbk
4709036*73493125896Island text1.8439121.570237.785Neighbours11BLASTN+709036.gbk
586974691121841473Island text1.6441518.140622.8644Neighbours11BLASTN+869746.gbk
6994640101951724878Island text1.6481417.932421.2685Neighbours11BLASTN+994640.gbk
71294000*132534231343Island text2.3026220.380123.9934Neighbours11BLASTN+IslandViewer 1294000.gbk
81411310143315721848Island text1.7232216.345532.9983Neighbours11BLASTN+1411310.gbk
91724993*175913834146Island text1.9536120.675527.0293Neighbours11BLASTN1724993.gbk
101963129198626223134Island text1.4497918.59816.0616Neighbours11BLASTN+IslandViewer 1963129.gbk
112575799*261011334315Island text2.1146623.747820.3983Neighbours11BLASTNIslandViewer 2575799.gbk
122820315284681226498Island text2.08581923.0422Neighbours11BLASTN2820315.gbk
133013697*303661322917Island text1.525818.44641.3022Neighbours11BLASTN+3013697.gbk