Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014166: Arcobacter nitrofigilis DSM 7299 chromosome, complete genome

NCBI: NC_014166

Host Lineage: Arcobacter nitrofigilis; Arcobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Isolation: roots of the marshplant; Temp: Mesophile; Temp: 25C; Habitat: Host; Isolation:roots; Country:Canada: Nova Scotia. Microaerophilic, symbiotic Gram-negative bacterium. Arcobacter nitrofigilis, formerly Campylobacter nitrofigilis, was isolated from the roots of the marshplant Spartina alterniflora in Nova Scotia, Canada.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133138*5604122904Island text1.7756314.000624.9726Neighbours21BLASTN+33138.gbk
2228293*24752319231Island text1.880314.902623.6923Neighbours21BLASTN228293.gbk
3401815*42611724303Island text1.4545614.682624.4731Neighbours21BLASTN+401815.gbk
4455378*47468719310Island text1.6903314.770825.7888Neighbours21BLASTN455378.gbk
5681290*70228720998Island text1.618914.78622.9748Neighbours21BLASTN+681290.gbk
6716000*73847222473Island text1.5784117.260529.425Neighbours21+716000.gbk
71008266102869020425Island text1.6759615.699228.0119Neighbours21BLASTN1008266.gbk
81077121*110271725597Island text2.0680916.8431.3716Neighbours21BLASTN+1077121.gbk
91179335120013620802Island text1.4958716.853129.0108Neighbours21BLASTN+1179335.gbk
101424754*147046045707Island text1.6555716.461326.0388Neighbours21BLASTN+1424754.gbk
111478469152392345455Island text1.8842522.704441.6116Neighbours21+1478469.gbk
121751906177424122336Island text2.1680612.624614.0029Neighbours21BLASTN1751906.gbk
131809052182957320522Island text1.5694714.867128.5175Neighbours21BLASTN1809052.gbk
142055984208137025387Island text1.7739717.761730.1892Neighbours21BLASTN+2055984.gbk
152149984*217447524492Island text1.6016815.01723.3585Neighbours21+2149984.gbk
162217790*224661828829Island text1.6278712.873924.9178Neighbours21BLASTN+2217790.gbk
172319447*234446925023Island text4.0199318.785733.7217Neighbours21BLASTN+2319447.gbk
182498500*256909970600Island text1.6716815.907825.3539Neighbours21BLASTN+2498500.gbk
192621500*264777326274Island text1.5766215.666125.9138Neighbours21BLASTN+2621500.gbk
202649444*267257623133Island text3.5743617.768924.5243Neighbours21BLASTN+2649444.gbk
212959688298355023863Island text2.5991314.691320.1281Neighbours21BLASTN2959688.gbk
222983564300626322700Island text1.5638315.746627.4577Neighbours21BLASTN2983564.gbk
233072703*310034527643Island text4.5968518.610226.5773Neighbours21BLASTN3072703.gbk