Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014165: Thermobispora bispora DSM 43833 chromosome, complete genome

NCBI: NC_014165

Host Lineage: Thermobispora bispora; Thermobispora; Pseudonocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Decaying manure; Temp: Thermophile; Temp: 55 - 65C; Isolation: decaying manure. Thermobispora bispora is a thermophilic actinomycete which is able to grow at 65 degrees C and not at 35 degrees C. This organism forms aerial mycelia which contain longitudinal pairs of spores.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127246*4794220697Island text1.6170112.333813.0862Neighbours11BLASTN27246.gbk
29250011009917600Island text1.6660611.806915.2089Neighbours11BLASTN+IslandViewer 92500.gbk
3374674*40234127668Island text2.1562614.275616.1387Neighbours11BLASTN+374674.gbk
4597000*65256355564Island text1.6732415.963218.4487Neighbours11BLASTN597000.gbk
52081914210211520202Island text1.5764813.434314.011Neighbours11BLASTN2081914.gbk
62533040256380530766Island text2.8623823.227918.9828Neighbours11BLASTN+2533040.gbk
72888961*290818919229Island text1.5229512.42115.8606Neighbours11BLASTN2888961.gbk
82928464*295012221659Island text1.8617514.938918.0864Neighbours11BLASTN+2928464.gbk
93559305*358380224498Island text1.5016814.019915.8058Neighbours11BLASTN3559305.gbk