Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014160: Thermosphaera aggregans DSM 11486 chromosome, complete genome

NCBI: NC_014160

Host Lineage: Thermosphaera aggregans; Thermosphaera; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Isolation: Hot spring from Obsidian Pool located in the Mud Volcano area of the Yellowstone National Park; Country: USA; Temp: Hyperthermophile; Temp: 85C; Habitat: Hot spring, Solfataric field. Thermosphaera aggregans is a hyperthermophilic archaeum isolated from terrestrial hot solfataric springs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
143486*6966726182Island text2.5682343.036829.771Neighbours9BLASTN+43486.gbk
253934756433624990Island text1.7664232.669622.317Neighbours338IslandViewer 539347.gbk
371940874575626349Island text1.5057733.45722.8591Neighbours9BLASTN+719408.gbk
4748743*78677638034Island text2.1498141.186451.93999BLASTN748743.gbk
5801618*83730335686Island text1.7734635.851544.5725Neighbours9BLASTN801618.gbk
6869873*89259922727Island text1.6986834.53349.5434Neighbours9BLASTN+869873.gbk
71124956114752722572Island text1.573135.692829.1616Neighbours9BLASTN1124956.gbk
81239811*127373633926Island text1.5754735.536740.1616Neighbours9BLASTN1239811.gbk
91273859*131450240644Island text1.7182134.338539.6436Neighbours9BLASTN1273859.gbk