Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014158: Tsukamurella paurometabola DSM 20162 chromosome, complete genome

NCBI: NC_014158

Host Lineage: Tsukamurella paurometabola; Tsukamurella; Tsukamurellaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Cases of systemic infection, usually in association with other diseases; Temp: Mesophile; Habitat: Sludge, Soil. Tsukamurella paurometabola, formerly Corynebacterium paurometabolum, was isolated from from mycetomes and ovaries of bed bugs (Cimex lectularius) and has also been found in soil and sludge. This organism has been isolated from cases of systemic infection, usually in association with other diseases.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1733449383820495Island text1.5524611.515112.9979Neighbours11BLASTN73344.gbk
223373332771193979Island text2.0311915.164717.4248Neighbours11BLASTN+IslandViewer 233733.gbk
31479313150261123299Island text1.5277211.84721.0059Neighbours11BLASTN+IslandViewer 1479313.gbk
41566310158807221763Island text1.5086412.540521.312Neighbours11BLASTNIslandViewer 1566310.gbk
51651326167532524000Island text1.734415.819623.0617Neighbours11BLASTN1651326.gbk
62561441*258525523815Island text1.4253814.749526.4466Neighbours11BLASTN+IslandViewer 2561441.gbk