Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014153: Thiomonas intermedia K12 chromosome, complete genome

NCBI: NC_014153

Host Lineage: Thiomonas intermedia; Thiomonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Country: Germany; Temp: Mesophile; Isolation: sewage pipe; Country: Germany, Hamburg. Thiomonas intermedia was isolated from a sewage pipe in Hamburg, Germany. This aerobic sulfur bacterium is a member of the beta-proteobacteria group. It oxidizes sulfur and is also able to fix carbon dioxide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1436082*45651520434Island text1.5917525.800536.263Neighbours11BLASTN436082.gbk
21663597168818424588Island text1.5378119.230316.8656Neighbours11BLASTN+IslandViewer 1663597.gbk
32044500207059926100Island text2.4383531.333122.7802Neighbours11BLASTN+IslandViewer 2044500.gbk
42077647209730019654Island text1.5105821.808117.19Neighbours11BLASTN+IslandViewer 2077647.gbk
52125551214991124361Island text1.7070324.143824.9518Neighbours11BLASTN+2125551.gbk
62187409221140623998Island text1.4997721.194120.173Neighbours11BLASTN+IslandViewer 2187409.gbk
72282725*230725524531Island text1.9029727.063436.0088Neighbours11BLASTN+IslandViewer 2282725.gbk
83084356310630321948Island text1.5364922.840122.4754Neighbours11BLASTN+IslandViewer 3084356.gbk