Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014152: Thermincola sp. JR, complete genome

NCBI: NC_014152

Host Lineage: Thermincola potens; Thermincola; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Russia; Isolation: hot spring; Country: Russia, Baikal Lake region. This organism was one of the first isolated from a thermophilic microbial fuel cell (MFC). Thermincola is a genus of Gram-positive, anaerobic, thermophilic bacteria, isolated from terrestrial hot springs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*3408834088Island text1.72830.182239.4025Neighbours21BLASTN+1.gbk
2191200*20939218193Island text1.8099430.377641.8382Neighbours22BLASTN+191200.gbk
3241776*26247520700Island text1.7245836.306349.4863Neighbours21BLASTN241776.gbk
4305955*32559919645Island text1.6786930.398849.7564Neighbours377BLASTN305955.gbk
539717741755920383Island text1.9270530.701644.9065Neighbours21+397177.gbk
642148145600734527Island text2.4922334.619726.6174Neighbours22BLASTN421481.gbk
755465657330218647Island text1.6181430.015827.4881Neighbours21BLASTN+554656.gbk
892796995098323015Island text1.4932132.362643.7569Neighbours22BLASTN+927969.gbk
91430156*145159921444Island text1.7284731.84249.0643Neighbours22BLASTN+1430156.gbk
102056991207533218342Island text1.8650930.240831.6847Neighbours21BLASTN+IslandViewer 2056991.gbk
112181360*220168920330Island text1.7349435.864249.6822Neighbours22BLASTN+2181360.gbk
122849991287622526235Island text2.2952833.823826.6884Neighbours21BLASTN+IslandViewer 2849991.gbk