Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014151: Cellulomonas flavigena DSM 20109 chromosome, complete genome

NCBI: NC_014151

Host Lineage: Cellulomonas flavigena; Cellulomonas; Cellulomonadaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 30C; Habitat: Soil. A facultative aerobic, chemoorganotrophic, Gram-positive bacterium. This organism produces cellulases and xylanases which are of interest for their potential use in biomass degradation and fuel production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130488*6009929612Island text2.4452914.80413.0202Neighbours11BLASTNIslandViewer 30488.gbk
237088239435823477Island text1.6101311.420312.1573Neighbours11BLASTN+IslandViewer 370882.gbk
344973248203832307Island text1.8993714.571612.0761Neighbours11BLASTN+IslandViewer 449732.gbk
4657382*67905121670Island text1.8079910.82059.64795Neighbours11BLASTNIslandViewer 657382.gbk
581375584656132807Island text3.2655618.51416.3567Neighbours11BLASTN+IslandViewer 813755.gbk
6856354*88191525562Island text2.6201514.443213.633Neighbours11BLASTN+IslandViewer 856354.gbk
71033736105609922364Island text1.3103310.700416.7743Neighbours11BLASTN+1033736.gbk
81373937139470220766Island text1.8421511.452813.4954Neighbours11BLASTN1373937.gbk
92312000233474222743Island text1.6030314.07478.6795Neighbours8BLASTN2312000.gbk
102945037*297209927063Island text1.5642216.647123.8786Neighbours8BLASTN2945037.gbk
113611956366328251327Island text1.6846111.386311.3522Neighbours11BLASTN+IslandViewer 3611956.gbk
123663295368650923215Island text1.5611411.661215.5213Neighbours11BLASTN+IslandViewer 3663295.gbk
133687612370763420023Island text1.6403810.320411.0001Neighbours11BLASTNIslandViewer 3687612.gbk
143797861382567327813Island text2.1633615.207215.2368Neighbours11BLASTN+IslandViewer 3797861.gbk
154021394406852347130Island text1.5920211.92989.02792Neighbours11BLASTN+IslandViewer 4021394.gbk
164106624*413399927376Island text1.5865214.153716.6281Neighbours11BLASTN4106624.gbk