Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014150: Brachyspira murdochii DSM 12563 chromosome, complete genome

NCBI: NC_014150

Host Lineage: Brachyspira murdochii; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Host, Intestinal microflora; Isolation: intestinal contents of healthy swine; Temp: Mesophile. Formerly Serpulina murdochii, this organism is part of the normal flora of the pig gastrointestinal tract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1978219782Island text1.6681415.62529.1144Neighbours21BLASTN1.gbk
213731515888921575Island text1.9933413.73313.7543Neighbours21BLASTN137315.gbk
319200021009918100Island text1.7648914.169920.0968Neighbours21BLASTNIslandViewer 192000.gbk
4233194*25800124808Island text1.8574515.949426.9006Neighbours21BLASTN233194.gbk
5446359*46998023622Island text1.804317.938428.1551Neighbours21BLASTN+446359.gbk
6582093*60614924057Island text1.6567313.524426.075Neighbours21BLASTN+582093.gbk
764886867345624589Island text1.8646213.743324.333Neighbours21BLASTN+648868.gbk
81006000*102850522506Island text1.8342113.901421.6287Neighbours21BLASTN1006000.gbk
91099507112317623670Island text2.0043512.414921.0805Neighbours21BLASTN1099507.gbk
101123570*114629122722Island text1.3711818.318331.8492Neighbours21BLASTN+1123570.gbk
111304573*132443919867Island text1.538416.1626.3476Neighbours21BLASTN1304573.gbk
121423758144633922582Island text1.5682712.965117.1945Neighbours21BLASTN1423758.gbk
131497381151600518625Island text2.3729313.1323