Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014150: Brachyspira murdochii DSM 12563 chromosome, complete genome

NCBI: NC_014150

Host Lineage: Brachyspira murdochii; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Host, Intestinal microflora; Isolation: intestinal contents of healthy swine; Temp: Mesophile. Formerly Serpulina murdochii, this organism is part of the normal flora of the pig gastrointestinal tract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1978219782Island text1.6681415.62529.1144Neighbours21BLASTN1.gbk
213731515888921575Island text1.9933413.73313.7543Neighbours21BLASTN137315.gbk
319200021009918100Island text1.7648914.169920.0968Neighbours21BLASTNIslandViewer 192000.gbk
4233194*25800124808Island text1.8574515.949426.9006Neighbours21BLASTN233194.gbk
5446359*46998023622Island text1.804317.938428.1551Neighbours21BLASTN+446359.gbk
6582093*60614924057Island text1.6567313.524426.075Neighbours21BLASTN+582093.gbk
764886867345624589Island text1.8646213.743324.333Neighbours21BLASTN+648868.gbk
81006000*102850522506Island text1.8342113.901421.6287Neighbours21BLASTN1006000.gbk
91099507112317623670Island text2.0043512.414921.0805Neighbours21BLASTN1099507.gbk
101123570*114629122722Island text1.3711818.318331.8492Neighbours21BLASTN+1123570.gbk
111304573*132443919867Island text1.538416.1626.3476Neighbours21BLASTN1304573.gbk
121423758144633922582Island text1.5682712.965117.1945Neighbours21BLASTN1423758.gbk
131497381151600518625Island text2.3729313.132327.1592Neighbours21BLASTN+IslandViewer 1497381.gbk
141523108154619523088Island text1.4699414.390825.5512Neighbours21BLASTN+1523108.gbk
151607873163159023718Island text1.5850112.800924.9665Neighbours21BLASTN1607873.gbk
161902241*192384321603Island text2.2534214.744321.6896Neighbours21BLASTN1902241.gbk
171936154*198178345630Island text2.4972115.258527.881Neighbours21BLASTN+IslandViewer 1936154.gbk
182055907*207895323047Island text1.5379113.670423.9189Neighbours21BLASTN2055907.gbk
192088012*212109933088Island text3.0837917.755131.5001Neighbours21BLASTN+2088012.gbk
202146887*216709920213Island text2.2480915.194423.4401Neighbours21BLASTN2146887.gbk
212201251*224969748447Island text1.9284715.626125.8974Neighbours21BLASTN+2201251.gbk
222399997242070520709Island text1.5086315.228324.0544Neighbours21BLASTN+2399997.gbk
232501299252472923431Island text1.5291615.007825.2799Neighbours21BLASTN+2501299.gbk
242560475258917028696Island text2.5427216.764729.6732Neighbours21BLASTN+2560475.gbk
252617072264049123420Island text1.4430514.536724.4914Neighbours21BLASTN+2617072.gbk
262798000282110323104Island text1.4959514.646228.3896Neighbours21BLASTN+2798000.gbk
272924158294819224035Island text1.4733815.223725.539Neighbours21BLASTN+2924158.gbk
282994000301678522786Island text1.5459818.595827.647Neighbours21BLASTN2994000.gbk
293053859307676822910Island text1.8841912.290226.9826Neighbours21BLASTN+3053859.gbk
303085013*310947924467Island text1.7413117.948532.8501Neighbours21BLASTN3085013.gbk
313139852317791838067Island text2.3585413.082921.2056Neighbours21BLASTN3139852.gbk