Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014148: Planctomyces limnophilus DSM 3776 chromosome, complete genome

NCBI: NC_014148

Host Lineage: Planctomyces limnophilus; Planctomyces; Planctomycetaceae; Planctomycetales; Planctomycetes; Bacteria

General Information: Isolation: Surface water; Temp: Mesophile; Habitat: Fresh water, Marine; Isolation: surface water. Planctomyces limnophilus is a member of the order Planctomycetales, a group of budding mostly aquatic microorganisms lacking peptidoglycan and representing a phylogenetically distinct lineage within the domain Bacteria. The planctomycetes share a number of morphological features, having spherical or ovoid cells which bear crateriform structures and, in some cases, nonprosthecate appendages. The is the type strain and was isolated from the surface waters of a German lake.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1602864*62674423881Island text1.4439929.18951.8943Neighbours14BLASTN602864.gbk
23368519*339280724289Island text1.5873933.06350.6621Neighbours11BLASTN+3368519.gbk
33959960398992629967Island text1.5223936.915148.7782Neighbours14BLASTN+IslandViewer 3959960.gbk
44037357*405695819602Island text1.5069133.61553.3774Neighbours14+4037357.gbk
54576500459620319704Island text1.5118333.453952.0085Neighbours11BLASTN4576500.gbk