Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014125: Legionella pneumophila 2300/99 Alcoy chromosome, complete genome

NCBI: NC_014125

Host Lineage: Legionella pneumophila; Legionella; Legionellaceae; Legionellales; Proteobacteria; Bacteria

General Information: This strain (2300/99 Alcoy) belongs to serogroup 1 and is considered endemic in Spanish areas. It was isolated from a patient affected by legionellosis in Alcoy (Spain). One of the most important outbreaks was registered in Murcia (Spain) in 2001, when more than 751 cases of suspected Legionellosis were registered. This organism is a non-marine bacterium usually found growing inside other organisms such as protozoans in aquatic environments. They can also be found in soil, freshwater, and in biofilms. Protozoans may act as bacterial reservoirs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1766576*79576729192Island text2.295931.405142.2892BLASTN+766576.gbk
22463751248827124521Island text2.6803231.737749.3131Neighbours21BLASTN+IslandViewer 2463751.gbk
32489949251206522117Island text1.7828343.116847.7867Neighbours21BLASTNIslandViewer 2489949.gbk
43054000307842924430Island text1.5862222.547534.564Neighbours21BLASTN3054000.gbk