Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014122: Methanocaldococcus infernus ME chromosome, complete genome

NCBI: NC_014122

Host Lineage: Methanocaldococcus infernus; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Isolation: Deep-sea hydrothermal chimney sample; Temp: Thermophile; Temp: 55 - 91C; Habitat: Deep sea, Marine. Hyperthermophilic methanogen. Methanocaldococcus infernus was isolated from a deep sea hydrothermal vent on the Mid-Atlantic Ridge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1143446*16658423139Island text2.5162422.139516.8535Neighbours351BLASTN+143446.gbk
2205112*22866723556Island text1.6072122.720133.5912Neighbours21BLASTN+IslandViewer 205112.gbk
3247660*27117523516Island text1.4758223.47435.1383Neighbours351BLASTN247660.gbk
434136536109119727Island text1.599121.960139.4506Neighbours21BLASTN341365.gbk
539385641638122526Island text1.5577623.863140.7784Neighbours351BLASTN+393856.gbk
6549932*60064550714Island text1.916124.78539.3516NeighboursBLASTN549932.gbk
7606000*62829022291Island text1.5228923.601736.4478Neighbours351BLASTN606000.gbk
8665684*68395418271Island text1.7135221.789937.7086Neighbours351BLASTN665684.gbk
9685701*70871223012Island text1.7413323.224732.4826Neighbours21BLASTN685701.gbk
10726070*75022424155Island text1.9670624.513635.9636Neighbours351BLASTN726070.gbk
11773825*79479620972Island text1.6923123.531138.5297Neighbours351BLASTN773825.gbk
12842560*86651823959Island text1.4027222.087834.3891Neighbours351BLASTN+842560.gbk
13939190*95847219283Island text1.5722.199336.1554Neighbours21BLASTN+939190.gbk
14967194*98797520782Island text1.7950221.769638.6436Neighbours21BLASTN+967194.gbk
151172705119609023386Island text1.5656123.574317.9787Neighbours21BLASTN+1172705.gbk
161313303133799924697Island text2.6288422.152411.7137Neighbours21BLASTN+1313303.gbk