Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014121: Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete

NCBI: NC_014121

Host Lineage: Enterobacter cloacae; Enterobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Enterobacter species are found in natural environments such as water, sewage, soil, and vegetables; some species are found in human and animal species. Enterobacter cloacae is a prevalent nosocomial pathogen as it is highly resistant to disinfectants and antimicrobial agents. E.cloacae subsp. cloacae strain ATCC 13047 was isolated from human cerebrospinal fluid in 1890 and is the type strain. These "ICU bugs" cause significant morbidity and mortality, and infection management is complicated by multiple antibiotic resistance. These bacteria possess inducible beta-lactamases, which are undetectable in vitro but are also responsible for resistance during treatment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1398012*42358425573Island text1.810438.574722.0766Neighbours41BLASTN+IslandViewer 398012.gbk
248950052159932100Island text1.992142.586929.8317Neighbours41BLASTN+IslandViewer 489500.gbk
359866962384925181Island text1.7418734.700326.5014Neighbours41BLASTN+598669.gbk
4677799*69989822100Island text1.8482335.225523.0553Neighbours41BLASTN+IslandViewer 677799.gbk
51038554106077322220Island text1.5985534.812730.8355Neighbours51BLASTN+IslandViewer 1038554.gbk
61101093*113435733265Island text2.1825841.647830.4518Neighbours41BLASTN+IslandViewer 1101093.gbk
71357339138312725789Island text2.5170140.521630.1487Neighbours41BLASTNIslandViewer 1357339.gbk
81589389*162248733099Island text3.7034850.62726.3509Neighbours41BLASTN+IslandViewer 1589389.gbk
91653385167270919325Island text1.5320434.37528.1886Neighbours41BLASTN+1653385.gbk
101682638172492542288Island text1.753136.696329.4678Neighbours41BLASTN+IslandViewer 1682638.gbk
111822895184662423730Island text1.8792340.5932.94Neighbours51BLASTN+IslandViewer 1822895.gbk
121848971*187217723207Island text1.5440133.195523.6813Neighbours41BLASTN+1848971.gbk
132090630212903438405Island text1.6549337.441225.6933NeighboursBLASTN2090630.gbk
142247913227137723465Island text1.8750336.824521.6683Neighbours41BLASTN+2247913.gbk
152330451236009929649Island text2.055338.878427.9508Neighbours41BLASTN+IslandViewer 2330451.gbk
162514544*255659942056Island text2.4012539.597427.0503Neighbours41BLASTN+IslandViewer 2514544.gbk
172629075*265233623262Island text1.4756931.663421.8053Neighbours41BLASTN+2629075.gbk
182745097*276822023124Island text1.6671235.399422.9145Neighbours41BLASTN+IslandViewer 2745097.gbk
193188928321328724360Island text1.8495535.639627.0861Neighbours41BLASTN+IslandViewer 3188928.gbk
203235911326030624396Island text2.2511438.34929.132Neighbours41BLASTN+IslandViewer 3235911.gbk
213399685343519435510Island text3.6834846.636525.8568Neighbours41BLASTNIslandViewer 3399685.gbk
223453815347704723233Island text1.8479339.504830.5199Neighbours41BLASTN3453815.gbk
233483976350876424789Island text1.9592736.231429.2017Neighbours41BLASTN+3483976.gbk
243553809358001526207Island text2.0222140.105624.1115Neighbours41BLASTN+IslandViewer 3553809.gbk
253627588367459947012Island text1.8906636.785839.6771Neighbours41BLASTN+IslandViewer 3627588.gbk
263776902380024423343Island text1.6711734.797319.7206Neighbours41BLASTN+IslandViewer 3776902.gbk
274043198407122728030Island text2.0540738.790223.5217Neighbours41BLASTNIslandViewer 4043198.gbk
284299500*433477235273Island text2.0273938.290226.4615Neighbours41BLASTN+IslandViewer 4299500.gbk
294577324460113023807Island text1.9089437.376122.8408Neighbours41BLASTN+IslandViewer 4577324.gbk
305000069503057530507Island text3.0079448.335623.463Neighbours41BLASTN+IslandViewer 5000069.gbk