Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014119: Burkholderia sp. CCGE1002 chromosome chromosome 3, complete

NCBI: NC_014119

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Rhizosphere, Rhizosphere-colonizing. Isolated from legume nodules in Mexico and Brazil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
197713699509917964Island text1.5696116.743721.3668Neighbours11BLASTN977136.gbk
21059223108645627234Island text1.6328727.788329.9934Neighbours11BLASTN+IslandViewer 1059223.gbk