Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014118: Burkholderia sp. CCGE1002 chromosome chromosome 2, complete

NCBI: NC_014118

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Rhizosphere, Rhizosphere-colonizing. Isolated from legume nodules in Mexico and Brazil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1987889104450356615Island text1.5584826.34128.7005Neighbours11BLASTN+IslandViewer 987889.gbk
21083492110889225401Island text1.627722.742219.9916Neighbours11BLASTNIslandViewer 1083492.gbk
31171411119462023210Island text1.8223127.97630.7772Neighbours11BLASTNIslandViewer 1171411.gbk
41331164135459923436Island text1.7003729.610224.6176Neighbours11BLASTN+IslandViewer 1331164.gbk
51528851155111722267Island text1.5259219.683219.975Neighbours11BLASTN+IslandViewer 1528851.gbk
61559770157876218993Island text1.5143518.017418.6168Neighbours11BLASTN1559770.gbk
71592000162157729578Island text1.6677623.753926.9214Neighbours11BLASTNIslandViewer 1592000.gbk
82316000*234104325044Island text2.2390728.683536.1165Neighbours11BLASTN2316000.gbk
92369669239210922441Island text1.4940720.057117.4138Neighbours11BLASTN+IslandViewer 2369669.gbk
102417838*244051722680Island text1.4311921.534515.9581Neighbours11BLASTN+IslandViewer 2417838.gbk