Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014117: Burkholderia sp. CCGE1002 chromosome chromosome 1, complete

NCBI: NC_014117

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Rhizosphere, Rhizosphere-colonizing. Isolated from legume nodules in Mexico and Brazil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1132524*17885446331Island text1.7906925.228119.8223Neighbours11BLASTN+IslandViewer 132524.gbk
2442616*51580273187Island text1.9208627.664421.2643Neighbours11BLASTN+IslandViewer 442616.gbk
32608000*263073122732Island text1.5364718.512912.5046Neighbours11BLASTNIslandViewer 2608000.gbk
42684631*271225727627Island text1.5828122.115721.7754Neighbours11BLASTN+IslandViewer 2684631.gbk
53375796*339809922304Island text1.4735424.823716.555Neighbours11BLASTNIslandViewer 3375796.gbk