Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014103: Bacillus megaterium DSM319 chromosome, complete genome

NCBI: NC_014103

Host Lineage: Bacillus megaterium; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus megaterium is a naturally occurring soil bacterium, originally named because of its large size in relation to E. coli. This bacterium produces a number of useful enzymes, such as, amylases and proteases which have industrial uses. In addition this organism can be used for the production and export of other economically important compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
12635695265844122747Island text1.9758120.987440.6322Neighbours21BLASTN+IslandViewer 2635695.gbk
23212839323311520277Island text1.6002821.829434.249Neighbours21BLASTN3212839.gbk
33985897*400890423008Island text1.4755523.644235.3454Neighbours21BLASTN3985897.gbk
44059905*407793618032Island text1.5012822.993738.3542Neighbours21BLASTN4059905.gbk