Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014100: Caulobacter segnis ATCC 21756 chromosome, complete genome

NCBI: NC_014100

Host Lineage: Caulobacter segnis; Caulobacter; Caulobacteraceae; Caulobacterales; Proteobacteria; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Habitat: Fresh water. Caulobacter segnis strain ATCC 21756 is a prostheca-less bacterium belonging to the genus Caulobacter; it was isolated from soil although its habitat is considered to be fresh-water. The absence of a stalk in this genus makes this an interesting bacterium to study.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1172452*19647824027Island text2.566821.6128.1911Neighbours11BLASTN+172452.gbk
2449541*48044930909Island text2.5553727.010223.7425Neighbours11BLASTN+IslandViewer 449541.gbk
3533322*56190028579Island text2.602322.595831.7628Neighbours11BLASTNIslandViewer 533322.gbk
41144463*117100626544Island text2.5605821.340826.7873Neighbours11BLASTN+1144463.gbk
52782000*280425722258Island text1.3865118.610210.7565Neighbours11BLASTNIslandViewer 2782000.gbk