Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014098: Bacillus tusciae DSM 2912 chromosome, complete genome

NCBI: NC_014098

Host Lineage: Kyrpidia tusciae; Kyrpidia; Alicyclobacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolation: Solfatara in Italy; Temp: Thermophile; Temp: 50C. This thermophilic and acidophilic species was isolated in Solfatara, Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185000088310233103Island text3.0616142.342544.3869Neighbours33BLASTN+IslandViewer 850000.gbk
21114076*113525421179Island text1.5729630.055345.3527Neighbours19BLASTN+1114076.gbk
31258559128729728739Island text1.6422735.634944.9335Neighbours11BLASTN+1258559.gbk
41553900*157609922200Island text1.5821130.857928.9012Neighbours33BLASTN+1553900.gbk
51670327169811027784Island text3.0214741.466632.552Neighbours33BLASTN+IslandViewer 1670327.gbk
62109416*212842519010Island text1.5728630.721152.4942Neighbours33BLASTN+IslandViewer 2109416.gbk
72225174*227484649673Island text1.4812530.651138.6405Neighbours11BLASTN+IslandViewer 2225174.gbk
82332938*236071227775Island text2.5037439.490544.4448Neighbours33BLASTN+IslandViewer 2332938.gbk
92735500275709921600Island text1.6685632.177833.1114Neighbours33BLASTN+IslandViewer 2735500.gbk
102809689282809918411Island text1.55128.866726.8912Neighbours11BLASTN+IslandViewer 2809689.gbk
112971011299873827728Island text1.8972634.275333.1559Neighbours33BLASTN+2971011.gbk
123008951*303027321323Island text1.7595230.631933.3232Neighbours33BLASTNIslandViewer 3008951.gbk
133030274305764927376Island text2.2433938.347933.9391Neighbours11BLASTN+IslandViewer 3030274.gbk
143133440316017326734Island text1.7591534.388240.4965Neighbours19BLASTN+IslandViewer 3133440.gbk
153372000*339499923000Island text1.8800631.257349.3193Neighbours11BLASTN3372000.gbk