Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014041: Zunongwangia profunda SM-A87 chromosome, complete genome

NCBI: NC_014041

Host Lineage: Zunongwangia profunda; Zunongwangia; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Zunongwangia profunda is an orange-pigmented, Gram-negative, nonmotile, strictly aerobic and oxidase- and catalase-positive bacterium isolated from the deep-sea sediment of the southern Okinawa Trough area.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155800057859320594Island text1.5467419.4132.1892Neighbours21BLASTN558000.gbk
259546461743021967Island text1.636620.939435.8116Neighbours21BLASTN595464.gbk
3661352*68452923178Island text1.5020520.695523.6204Neighbours21BLASTN+661352.gbk
41084246110624121996Island text1.6071932.917635.4785BLASTNIslandViewer 1084246.gbk
51395761141506219302Island text1.5071319.297225.9776Neighbours21BLASTN+1395761.gbk
63197192322156924378Island text1.4742322.853838.6466Neighbours21BLASTN+3197192.gbk
73229867325733527469Island text1.39922.872136.5879Neighbours21BLASTN+IslandViewer 3229867.gbk
83633842365609922258Island text1.6462820.114934.0358Neighbours21BLASTN+3633842.gbk
93662906368285819953Island text1.5440519.941630.4645Neighbours21BLASTN+IslandViewer 3662906.gbk
103715000374879533796Island text1.722928.942238.1632Neighbours32BLASTN+IslandViewer 3715000.gbk
114093190412640133212Island text1.5218220.660735.1282Neighbours21BLASTN4093190.gbk
124156059*417444218384Island text1.8168319.102630.9843Neighbours21BLASTN4156059.gbk
134335948436134425397Island text1.6103326.927232.4467Neighbours21BLASTNIslandViewer 4335948.gbk
144517999454130423306Island text1.4411720.507135.6194Neighbours214517999.gbk