Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014034: Rhodobacter capsulatus SB1003 chromosome, complete genome

NCBI: NC_014034

Host Lineage: Rhodobacter capsulatus; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain is a derivative strain isolated in the laboratory of Barry Marrs from the classical progenitor strain B10. It is rifampicin-resistant, produces GTA, and is capable of growing under high illumination (resistant to photooxidative killing). Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to use photosynthesis and usually can grow under both anaerobic and aerobic conditions. This organism is a facultatively phototrophic purple non-sulfur bacterium and the type species of the Rhodobacter group. The colony's color depends largely on the amount of oxygen present in its environment. While it is able to produce cellular energy in a number of different ways, it can rely on anoxygenic photosynthesis under anaerobic conditions in the presence of light. Some strains produce the Gene Transfer Element (GTA), a pro-phage particle capable of transferring genetic material between strains.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1152264*17763125368Island text2.908125.88235.6316Neighbours11BLASTN+IslandViewer 152264.gbk
2995661*102273727077Island text3.4514127.876132.416Neighbours11BLASTN+IslandViewer 995661.gbk
31036652106561128960Island text1.8866322.837422.9431Neighbours11BLASTN+IslandViewer 1036652.gbk
41330843135595225110Island text1.794521.892227.1557Neighbours11BLASTNIslandViewer 1330843.gbk
51394898141709922202Island text1.7348420.146528.2562Neighbours11BLASTN+IslandViewer 1394898.gbk
61418681144488426204Island text1.9214324.41221.0622Neighbours11BLASTN+IslandViewer 1418681.gbk
71507047*153107924033Island text3.2258326.766733.3805Neighbours11BLASTN+IslandViewer 1507047.gbk
81816000184204826049Island text1.5989221.917234.1386Neighbours11BLASTN+1816000.gbk
92253649227867525027Island text2.0133521.901324.7184Neighbours11BLASTN+IslandViewer 2253649.gbk
102899120*292265123532Island text2.0212523.538822.6357Neighbours11BLASTN+IslandViewer 2899120.gbk
113111981313862526645Island text2.5983629.005218.9609Neighbours11BLASTN+IslandViewer 3111981.gbk
123570034*359343423401Island text2.9615524.758832.569Neighbours11BLASTN+IslandViewer 3570034.gbk