Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014033: Prevotella ruminicola 23 chromosome, complete genome

NCBI: NC_014033

Host Lineage: Prevotella ruminicola; Prevotella; Prevotellaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: These organisms are common rumen inhabitants. It is one of the most commonly isolated species from rumen contents and possesses the capacity to degrade plant cell wall polysaccharides, proteins, and peptides, contributing to the utilization of noncellulosic polysaccharides, such as starch and xylan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110302013708034061Island text3.0517842.219733.2245Neighbours21BLASTN+103020.gbk
216467018544420775Island text2.5503541.018231.3997Neighbours21BLASTN164670.gbk
3395000*43810243103Island text2.3797839.552126.584Neighbours21BLASTN+IslandViewer 395000.gbk
452236354124718885Island text2.8662338.676429.4128Neighbours21BLASTN+522363.gbk
5619469*64956330095Island text3.4095142.634424.2163Neighbours21BLASTN619469.gbk
6675626*69470619081Island text2.0484239.360419.0238Neighbours21BLASTN675626.gbk
777275479465621903Island text3.0250440.966128.7139Neighbours24BLASTN772754.gbk
8896120*91999823879Island text3.0710741.305922.1688Neighbours24BLASTN896120.gbk
91062935*108059917665Island text1.6679438.013752.2414BLASTN+1062935.gbk
101088500111709928600Island text3.8081542.934819.753Neighbours21BLASTN+1088500.gbk
111152994117569622703Island text2.3347637.50637.9678Neighbours21BLASTN1152994.gbk
121215790*124290127112Island text2.7446841.044428.4644Neighbours21BLASTN1215790.gbk
131301154132409922946Island text2.2324138.155122.2996Neighbours21BLASTN+IslandViewer 1301154.gbk
141564733158988425152Island text2.3686639.145232.4933Neighbours24BLASTN+1564733.gbk
151633493165467021178Island text2.3712138.052725.9596Neighbours21BLASTN+1633493.gbk
161664500*169180627307Island text2.8068342.097229.8398Neighbours21BLASTN1664500.gbk
171691822*172381531994Island text3.0467841.207425.8334Neighbours21BLASTN+1691822.gbk
181808782*184977940998Island text4.0765844.179427.6543Neighbours21BLASTN+1808782.gbk
192080818213256851751Island text2.6860241.675333.8367Neighbours21BLASTN+IslandViewer 2080818.gbk
202410331244272832398Island text2.4283341.223633.1133Neighbours21BLASTN2410331.gbk
213462437348973727301Island text2.5390442.312824.6455Neighbours21BLASTN3462437.gbk