Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014032: Salinibacter ruber M8 chromosome, complete genome

NCBI: NC_014032

Host Lineage: Salinibacter ruber; Salinibacter; Rhodothermaceae; Bacteroidetes Order II; Bacteroidetes; Bacteria

General Information: Salinibacter ruber (strain M8) is a brightly red-pigmented, motile, rod-shaped, extremely halophilic Gram-negative bacterium isolated from a saltern crystallizer pond in Mallorca, Spain. It grows optimally at salt concentrations between 20 and 30% and does not grow below 15% salt. S. ruber is among the most halophilic organisms known within the domain Bacteria. This organism is an extremely halophilic aerobe originally isolated from saltern crystallizer ponds in Spain. These bacteria can coexist in significant colonies with halophilic archaea under saline conditions. In contrast to other bacteria they do not regulate their intracellular salt conditions through proton pumps, but instead their protein makeup has adapted to be functional under high ionic conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1717249159919876Island text2.1904520.412828.6661Neighbours11BLASTN+71724.gbk
224957026844218873Island text1.6085219.862619.4969Neighbours11BLASTN+IslandViewer 249570.gbk
3269844*32895759114Island text2.9167427.242923.376Neighbours11BLASTN+IslandViewer 269844.gbk
433854736759929053Island text2.2692924.281516.9993Neighbours11BLASTN+IslandViewer 338547.gbk
537442640709932674Island text2.3779426.375723.5532Neighbours11BLASTN374426.gbk
6825793928185102393Island text4.8190433.967429.4968Neighbours18BLASTN+IslandViewer 825793.gbk
71408967*142920820242Island text1.6256620.496936.4204Neighbours11BLASTN1408967.gbk
81911500*193095119452Island text2.1677419.978120.3557Neighbours11BLASTN1911500.gbk
91972623*199134418722Island text1.615419.886918.2422Neighbours11BLASTN1972623.gbk
102440656246761426959Island text1.7993323.202831.0192Neighbours11BLASTN+2440656.gbk
112767966278732219357Island text1.8521720.654224.831Neighbours11BLASTN2767966.gbk
123330596335427623681Island text2.0989920.397622.5484Neighbours11BLASTN+IslandViewer 3330596.gbk
133573920359347519556Island text3.344426.247430.6318Neighbours11BLASTN+3573920.gbk