Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014011: Aminobacterium colombiense DSM 12261 chromosome, complete genome

NCBI: NC_014011

Host Lineage: Aminobacterium colombiense; Aminobacterium; Synergistaceae; Synergistales; Synergistetes; Bacteria

General Information: Isolation: Anaerobic lagoon of dairy wastewater; Country: Colombia; Temp: Mesophile; Temp: 37C; Habitat: Wastewater, Fresh water. Aminobacterium colombiense was isolated from a dairy wastewater treatment plant. This organism can grow on serine, threonine and glycine.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147265049778625137Island text1.8864531.840228.1393Neighbours21BLASTN+472650.gbk
252768154916821488Island text1.7189832.073819.4535Neighbours21BLASTN+IslandViewer 527681.gbk
3655266*68372428459Island text1.7626730.330249.3368BLASTN+655266.gbk
4813645*83748723843Island text1.7279628.930929.2598Neighbours21BLASTN+813645.gbk
5962474*98859926126Island text1.9896132.775719.8345Neighbours21BLASTN+IslandViewer 962474.gbk
61139818116668426867Island text1.5191629.790244.5893Neighbours21+IslandViewer 1139818.gbk
71264165*129026726103Island text1.4886428.550612.7665Neighbours21BLASTN+1264165.gbk
81354261137432420064Island text1.6119132.475123.7163Neighbours21BLASTN+1354261.gbk
91760793*179428233490Island text2.1523831.968420.1234Neighbours21BLASTN+IslandViewer 1760793.gbk