Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014008: Coraliomargarita akajimensis DSM 45221 chromosome, complete genome

NCBI: NC_014008

Host Lineage: Coraliomargarita akajimensis; Coraliomargarita; Puniceicoccaceae; Puniceicoccales; Verrucomicrobia; Bacteria

General Information: Isolation: Seawater surrounding the hard coral; Country: Japan; Temp: Mesophile; Habitat: Marine. Obligately aerobic, non-spore-forming, non-motile, Gram-negative bacterium. Coraliomargarita akajimensis was isolated from the seawater surrounding hard coral at 3-5 meters below the surface at Majanohama, Akajima, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111400013620422205Island text1.7585332.575451.9308Neighbours14BLASTN114000.gbk
235429239510640815Island text1.8852144.005343.0786Neighbours14BLASTN+354292.gbk
366917068709917930Island text1.5008433.262447.253Neighbours14+669170.gbk
472047074809927630Island text1.8177143.835844.6647Neighbours14BLASTN720470.gbk
51246642127117924538Island text1.4275533.785341.887Neighbours14BLASTN+1246642.gbk
61463795*148708323289Island text1.5713733.0851.072Neighbours14BLASTN1463795.gbk
71552679*157161718939Island text1.7213134.22554.8585Neighbours14BLASTN1552679.gbk
82176633*219626519633Island text1.5151633.435754.4281Neighbours14BLASTN2176633.gbk
93296708*332809931392Island text1.9331736.09752.9818Neighbours11BLASTN+3296708.gbk
103500000352377323774Island text2.1747743.931544.8354Neighbours14BLASTN+3500000.gbk
113692349371791025562Island text1.7278839.654543.2594Neighbours14BLASTN3692349.gbk