Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014002: Methanohalophilus mahii DSM 5219 chromosome, complete genome

NCBI: NC_014002

Host Lineage: Methanohalophilus mahii; Methanohalophilus; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Isolation: Anaerobic sediment from Great Salt Lake; Country: USA; Temp: Mesophile; Temp: 37C; Habitat: Fresh water, Sediment. Methanohalophilus mahii is a halophilic methanogen that was isolated from sediment from the Great Salt Lake in Utah.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1312935197120679Island text1.6492829.517334.4658Neighbours21BLASTN+31293.gbk
28096712037639410Island text2.4490127.161212.169Neighbours21BLASTNIslandViewer 80967.gbk
3403180*42237819199Island text1.4866126.413543.9639Neighbours318BLASTN+403180.gbk
446699449009923106Island text1.8640924.942212.8639Neighbours21BLASTN+IslandViewer 466994.gbk
563164965175120103Island text1.51725.83939.9135Neighbours318BLASTN631649.gbk
6809816*83422124406Island text1.3759425.814737.0021Neighbours21BLASTN809816.gbk
71061501107959918099Island text1.7439224.449810.659Neighbours21BLASTNIslandViewer 1061501.gbk
81129349114991520567Island text1.875924.796813.8628Neighbours21BLASTN+IslandViewer 1129349.gbk
91173561119969626136Island text1.4937224.817642.9894Neighbours328BLASTN1173561.gbk
101308458133226423807Island text2.3163825.838512.6253Neighbours21BLASTN1308458.gbk
111357393*137608918697Island text1.5316524.790236.8437Neighbours318BLASTN1357393.gbk
121408085*142659918515Island text1.4889925.632346.4734Neighbours328BLASTN1408085.gbk
131469653*148910019448Island text1.6628824.438624.665Neighbours21BLASTN1469653.gbk
141772060180009428035Island text2.0493130.765448.7413Neighbours318BLASTN+1772060.gbk
151946664196771821055Island text2.09626.086314.6364Neighbours21BLASTN+1946664.gbk