Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013967: Haloferax volcanii DS2 chromosome, complete genome

NCBI: NC_013967

Host Lineage: Haloferax volcanii; Haloferax; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Haloferax volcanii DS2 was isolated from bottom sediments from the Dead Sea. Halophilic archaeon. This organism is similar to halobacteria and was originally classified in that genus. It has an optimum requirement for sodium chloride in the 1.7-2.5 molar which is half that generally associated with other halobacterium species.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122707224522818157Island text2.21220.741115.8241Neighbours11BLASTN+IslandViewer 227072.gbk
2827150*85049923350Island text1.554321.978415.483Neighbours11BLASTN+IslandViewer 827150.gbk
31289458*131086221405Island text1.7175822.478624.4871Neighbours11BLASTN+IslandViewer 1289458.gbk
41375255140950734253Island text4.6241438.251724.1113Neighbours11BLASTN+IslandViewer 1375255.gbk
51590500*161760827109Island text2.9852231.059126.0601Neighbours11BLASTNIslandViewer 1590500.gbk
61687825*171504127217Island text2.9149630.835917.082Neighbours11BLASTN+IslandViewer 1687825.gbk
71878045190592027876Island text1.6845523.711114.5161Neighbours12BLASTN+IslandViewer 1878045.gbk
81919938194117821241Island text1.5927821.166720.5689Neighbours11BLASTN+IslandViewer 1919938.gbk
91967896199023822343Island text1.5035321.212314.6364Neighbours11BLASTN+IslandViewer 1967896.gbk
102103968216021956252Island text4.5817840.960543.5676Neighbours12BLASTN+IslandViewer 2103968.gbk
112641433*268832946897Island text1.9273522.190426.6177Neighbours11BLASTN+IslandViewer 2641433.gbk
122760473*278313122659Island text2.1968923.450330.5857Neighbours11BLASTN2760473.gbk