Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013966: Haloferax volcanii DS2 plasmid pHV4, complete sequence

NCBI: NC_013966

Host Lineage: Haloferax volcanii; Haloferax; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Haloferax volcanii DS2 was isolated from bottom sediments from the Dead Sea. Halophilic archaeon. This organism is similar to halobacteria and was originally classified in that genus. It has an optimum requirement for sodium chloride in the 1.7-2.5 molar which is half that generally associated with other halobacterium species.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1258284858622759Island text2.0902233.186429.9976Neighbours12BLASTN+25828.gbk
2629308059917670Island text2.1005133.478217.4077Neighbours12BLASTN+62930.gbk
3107526*12959922074Island text2.1418631.847733.7215Neighbours12BLASTN+107526.gbk
423646325409917637Island text2.0363133.420526.6963Neighbours12BLASTN+236463.gbk
535550037655021051Island text2.3133935.186621.479Neighbours12BLASTN+355500.gbk
639921545259953385Island text2.3341337.040620.2287Neighbours11BLASTN+399215.gbk