Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013960: Nitrosococcus halophilus Nc4 chromosome, complete genome

NCBI: NC_013960

Host Lineage: Nitrosococcus halophilus; Nitrosococcus; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Marine. Nitrosococcus halophilus is an obligate chemolithotroph oxidizing ammonia to nitrite. It has been isolated from saline ponds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113848816763229145Island text2.2836738.200632.5783Neighbours310BLASTN+138488.gbk
224388426691623033Island text1.3782930.143528.9012Neighbours310BLASTN+243884.gbk
337946139804318583Island text1.5312829.356220.5506Neighbours310BLASTNIslandViewer 379461.gbk
445249347193019438Island text1.6795129.083640.8241Neighbours310BLASTN+452493.gbk
548961651178322168Island text1.7063329.382648.6503Neighbours310BLASTN+489616.gbk
680456783121026644Island text1.4954829.979335.9118Neighbours310BLASTN+804567.gbk
784118186012718947Island text1.5093630.921732.3608Neighbours353+841181.gbk
8979556100480325248Island text1.7178830.605631.9418Neighbours33BLASTN+IslandViewer 979556.gbk
91258000127820920210Island text1.5748232.978731.7842Neighbours310BLASTN+1258000.gbk
101319349133917819830Island text1.4644331.073741.8565Neighbours25BLASTN1319349.gbk
111484824150771122888Island text1.6958430.772731.7352Neighbours310BLASTN1484824.gbk
121587761164427556515Island text2.1855936.155126.2272Neighbours21BLASTN+IslandViewer 1587761.gbk
131693643171517421532Island text2.2300930.695520.2141Neighbours33BLASTN+1693643.gbk
141778411180057522165Island text1.5733934.947123.6051Neighbours11BLASTN+1778411.gbk
151808523184036331841Island text1.790632.297741.7534Neighbours310BLASTN+1808523.gbk
162166367219014623780Island text2.0046634.157125.9882Neighbours22BLASTN2166367.gbk
172261487*228382522339Island text1.5699734.355240.7754Neighbours310BLASTN2261487.gbk
182366910239222125312Island text1.8533534.991931.6679Neighbours310BLASTN+2366910.gbk
192440453*245844817996Island text1.518431.839753.3865Neighbours310BLASTN2440453.gbk
202592389261181519427Island text1.5061630.864941.7164Neighbours310BLASTN2592389.gbk
212662458268683224375Island text1.7884833.75130.9995Neighbours25BLASTN+2662458.gbk
222761353*278511923767Island text1.7000530.94627.9937Neighbours310BLASTN+2761353.gbk
233326955334746220508Island text1.7063130.340646.2622Neighbours310BLASTN3326955.gbk
243379515*340805228538Island text1.8126129.976325.5756Neighbours21BLASTNIslandViewer 3379515.gbk