Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013959: Sideroxydans lithotrophicus ES-1 chromosome, complete genome

NCBI: NC_013959

Host Lineage: Sideroxydans lithotrophicus; Sideroxydans; Gallionellaceae; Gallionellales; Proteobacteria; Bacteria

General Information: Isolation: iron contaminated groundwater in Michigan; Country: USA; Temp: Mesophile; Habitat: Fresh water. Sideroxydans lithotrophicus is an iron-oxidizing freshwater bacterium that has been isolated from iron contaminated groundwater.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18399210878124790Island text1.6083232.327118.5031Neighbours11BLASTN+IslandViewer 83992.gbk
2156991*17916522175Island text1.58733.616432.7222Neighbours11BLASTN+156991.gbk
382686887209945232Island text1.4453128.143239.2009Neighbours11BLASTN+IslandViewer 826868.gbk
41059004111084151838Island text2.2944440.49432.1595Neighbours11BLASTN+IslandViewer 1059004.gbk
51195249121309917851Island text1.597728.924531.0939Neighbours11BLASTN+IslandViewer 1195249.gbk
61428381144913220752Island text1.5039433.46328.2799Neighbours11BLASTN1428381.gbk
71555799157565319855Island text1.5502530.132525.2723Neighbours11BLASTN1555799.gbk
81723037*174709924063Island text1.7484731.855428.3429Neighbours11BLASTN1723037.gbk
92449315*247282523511Island text1.5516536.849538.5004Neighbours11BLASTNIslandViewer 2449315.gbk
102666321269260826288Island text1.4809930.1827.3115Neighbours45BLASTNIslandViewer 2666321.gbk
112801557282605124495Island text2.0488733.570437.0619Neighbours11BLASTN+IslandViewer 2801557.gbk
122892660*292827535616Island text1.9807839.238631.9404Neighbours11BLASTNIslandViewer 2892660.gbk