Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013958: Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequence

NCBI: NC_013958

Host Lineage: Nitrosococcus halophilus; Nitrosococcus; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Marine. Nitrosococcus halophilus is an obligate chemolithotroph oxidizing ammonia to nitrite. It has been isolated from saline ponds.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1295485229922752Island text1.4539232.08939.6151Neighbours310BLASTN+29548.gbk