Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013956: Pantoea ananatis LMG 20103 chromosome, complete genome

NCBI: NC_013956

Host Lineage: Pantoea ananatis; Pantoea; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Pantoea ananatis LMG20103 was isolated from Eucalyptus blight and dieback in South Africa, causing major economic losses of this important forestry crop. Pantoea ananatis is an emerging plant pathogen which causes disease on a broad range of plant hosts including maize, onion, rice, pineapple, melons and Eucalyptus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
145500047503720038Island text1.5313130.204329.2362Neighbours41BLASTN455000.gbk
2595320*63373038411Island text3.5127947.14721.827Neighbours41BLASTNIslandViewer 595320.gbk
366329568566022366Island text1.7509331.199723.311Neighbours41BLASTN663295.gbk
41207500123738329884Island text1.7743234.021321.8752Neighbours41BLASTN1207500.gbk
51762171180720245032Island text1.8246537.197525.3374Neighbours41BLASTNIslandViewer 1762171.gbk
61810026182909919074Island text1.5005931.608723.3311Neighbours41BLASTN1810026.gbk
71994970201970624737Island text2.0779336.728322.0778Neighbours41BLASTNIslandViewer 1994970.gbk
82523955254416020206Island text1.4973129.176821.7871Neighbours41BLASTN2523955.gbk
92592378261009917722Island text1.6051829.234629.4128Neighbours41BLASTN2592378.gbk
102749685278184532161Island text4.1354948.41522.7137Neighbours41BLASTNIslandViewer 2749685.gbk
113181421320344322023Island text1.709631.718826.2706Neighbours41BLASTN3181421.gbk
123273340330380130462Island text3.131946.430521.8489Neighbours41BLASTNIslandViewer 3273340.gbk
133525711354815922449Island text1.4937234.976924.8873Neighbours41BLASTNIslandViewer 3525711.gbk
143641368*367779836431Island text3.325247.397923.591Neighbours41BLASTNIslandViewer 3641368.gbk
154326388435118724800Island text2.7049345.177521.178Neighbours41BLASTNIslandViewer 4326388.gbk
164490000451370923710Island text2.0561335.95921.2534Neighbours41BLASTNIslandViewer 4490000.gbk
174579759459970619948Island text1.623534.815832.44Neighbours51BLASTNIslandViewer 4579759.gbk
184627890465524427355Island text1.7026634.107821.4782Neighbours41BLASTNIslandViewer 4627890.gbk