Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013949: Helicobacter mustelae 12198 chromosome, complete genome

NCBI: NC_013949

Host Lineage: Helicobacter mustelae; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Helicobacter mustelae was isolated from the gastric mucosa of a ferret. It is the natural colonizer of ferret gastric mucosa where it is found in association with a diffuse antral chronic gastritis and gastric ulcers. Inoculation of this bacteria into uninfected ferrets results in an inflammatory response similar to that seen in naturally infected animals, however, an association between gastric ulcers and Helicobacter mustelae infection has not yet been documented. All strains of this species have been reported to be urease, catalase and oxidase positive. Helicobacter mustelae is sensitive to 1.5% NaCl, metronidazole, and nalidixic acid and resistant to cephalothin and 5-fluorouracil.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
193969597537135677Island text1.4003624.537941.558BLASTN+939695.gbk
21163456*118858625131Island text1.598624.535438.8786Neighbours314BLASTN+1163456.gbk