Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013948: Mycoplasma agalactiae chromosome, complete genome

NCBI: NC_013948

Host Lineage: Mycoplasma agalactiae; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma agalactiae causes mastitis (infection of the mammary glands), arthritis, and pneumonia in sheep and goats. Asymptomatic animals can carry and spread the disease, making detection and erradication difficult. This disease is widespread in the Mediterranean and is of considerable economic importance, causing decreased yields of milk, and mortality or slowed growth of kids and lambs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1346165429519680Island text1.6189915.219722.2652Neighbours21BLASTN34616.gbk
276624179017123931Island text3.8818223.257435.3035Neighbours21766241.gbk