Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013947: Stackebrandtia nassauensis DSM 44728 chromosome, complete genome

NCBI: NC_013947

Host Lineage: Stackebrandtia nassauensis; Stackebrandtia; Glycomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Soil sample from Nassau Bahamas; Country: Bahamas; Temp: Mesophile; Temp: 28C; Habitat: Soil; Isolation: soil; Country:Bahamas: Nassau.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132698034736620387Island text1.786316.614318.1731Neighbours11BLASTNIslandViewer 326980.gbk
2373862*40122427363Island text3.5831623.629221.7746Neighbours11BLASTNIslandViewer 373862.gbk
346039849522334826Island text3.2184925.957829.6029Neighbours11BLASTN+IslandViewer 460398.gbk
4613774*63382720054Island text1.694815.065720.307Neighbours11BLASTN+IslandViewer 613774.gbk
565614068068124542Island text2.136918.502417.0057Neighbours11BLASTN+IslandViewer 656140.gbk
61011899*103569523797Island text2.6207120.638520.3425Neighbours11BLASTNIslandViewer 1011899.gbk
71296877*131646319587Island text1.5536314.977521.9637Neighbours11BLASTNIslandViewer 1296877.gbk
81363078*138138918312Island text1.5171715.436524.3087Neighbours11BLASTN1363078.gbk
91537275155795020676Island text2.2054417.001621.4886Neighbours11BLASTNIslandViewer 1537275.gbk
101570000159398623987Island text1.9510617.940418.9786Neighbours11BLASTN+IslandViewer 1570000.gbk
111665994169310927116Island text2.4877421.120226.4381Neighbours11BLASTNIslandViewer 1665994.gbk
121696671172434027670Island text2.2290218.433925.941Neighbours11BLASTN+IslandViewer 1696671.gbk
131956923198076223840Island text1.8246218.000532.1268Neighbours11BLASTN+1956923.gbk
142113941*214484730907Island text2.5987221.527732.0139Neighbours11BLASTN+IslandViewer 2113941.gbk
152351208237202720820Island text1.7598817.052532.8192Neighbours11BLASTN+2351208.gbk
163080290*311039130102Island text1.827419.092824.5501Neighbours11BLASTNIslandViewer 3080290.gbk
173347174338411536942Island text1.692722.329238.485Neighbours11BLASTN+IslandViewer 3347174.gbk
183406000*342559919600Island text1.5820916.827629.224Neighbours11BLASTN+IslandViewer 3406000.gbk
193534209355858624378Island text1.5347816.031721.0444Neighbours11BLASTN3534209.gbk
203785332*384029254961Island text1.9118419.290619.2499Neighbours11BLASTN+IslandViewer 3785332.gbk
214363250*438235419105Island text1.5871716.121530.6584Neighbours11BLASTN4363250.gbk
224413382443709923718Island text1.6319814.115123.5047Neighbours11BLASTN+4413382.gbk
234602959462471821760Island text1.7211816.609228.2434Neighbours11BLASTN4602959.gbk
244695000*472086325864Island text3.518125.432426.4287Neighbours11BLASTNIslandViewer 4695000.gbk
254917711493650618796Island text1.7933115.373719.2289Neighbours11BLASTNIslandViewer 4917711.gbk
264979000499704518046Island text1.578815.287615.0993Neighbours11BLASTN+4979000.gbk
275075581509797822398Island text1.6963415.537521.8419Neighbours11BLASTN5075581.gbk
285431741*545589424154Island text1.5356516.196527.482Neighbours11BLASTN+IslandViewer 5431741.gbk
295546315557137825064Island text1.6335515.254128.2495Neighbours11BLASTN+5546315.gbk
305682895570912926235Island text1.7265517.761733.1275Neighbours11BLASTN+IslandViewer 5682895.gbk
315747385577209924715Island text1.7979316.967821.6251Neighbours11BLASTNIslandViewer 5747385.gbk
326221877624561223736Island text1.4324719.953830.6676Neighbours11BLASTN+6221877.gbk
336585847662674840902Island text1.6854517.120922.5327Neighbours11BLASTN+IslandViewer 6585847.gbk
346678000670076922770Island text1.3326816.1628.1703Neighbours11BLASTN+6678000.gbk