Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013943: Denitrovibrio acetiphilus DSM 12809 chromosome, complete genome

NCBI: NC_013943

Host Lineage: Denitrovibrio acetiphilus; Denitrovibrio; Deferribacteraceae; Deferribacterales; Deferribacteres; Bacteria

General Information: Isolation: Oil reservoir model column; Country: Norway; Temp: Mesophile; Habitat: Fresh water, Marine. This organism was first isolated from an oil reservoir modeling column under nitrate enrichment and reduces nitrate to ammonia. Stimulating the growth of nitrate-reducing bacterium in an oil well may prevent the growth of sulfate-reducing bacterium which cause reservoir souring by the production of H2S.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112450014379019291Island text1.7111427.295144.2177BLASTN+124500.gbk
2382807*40276719961Island text1.4916832.569342.222BLASTN382807.gbk
31019213*104225623044Island text1.5138526.316346.4673Neighbours336BLASTN+1019213.gbk
41381000*140250321504Island text1.521827.298243.769Neighbours37BLASTN1381000.gbk
52361617238045118835Island text1.6497434.647651.2679BLASTN+2361617.gbk
62431643*245132819686Island text1.5118729.331844.3385Neighbours345BLASTN+2431643.gbk
72547966*256676218797Island text1.5504127.334648.9798BLASTN2547966.gbk
82610902262995319052Island text1.5392330.435345.5933BLASTN2610902.gbk
92705983272868722705Island text1.5046627.857544.3659Neighbours21BLASTN+2705983.gbk
102857751287861820868Island text1.7135435.21252.6394Neighbours354BLASTN+2857751.gbk