Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013940: Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete

NCBI: NC_013940

Host Lineage: Deferribacter desulfuricans; Deferribacter; Deferribacteraceae; Deferribacterales; Deferribacteres; Bacteria

General Information: Thermophilic sulphur-reducing bacterium. Isolated from a deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc, Japan. Deferribacter desulfuricans is an anaerobic, heterotrophic thermophile. It is a strictly anaerobic heterotroph capable of using complex organic compounds, ethanol and various organic acids as energy and carbon sources. Elemental sulfur, nitrate or arsenate was required for growth as an electron acceptor.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1254645459929136Island text1.7069813.506821.1472Neighbours21+25464.gbk
2110340*13259922260Island text2.1314813.086817.1616Neighbours21+110340.gbk
313771316133923627Island text2.113511.524220.8491Neighbours21+137713.gbk