Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013939: Deferribacter desulfuricans SSM1, complete genome

NCBI: NC_013939

Host Lineage: Deferribacter desulfuricans; Deferribacter; Deferribacteraceae; Deferribacterales; Deferribacteres; Bacteria

General Information: Thermophilic sulphur-reducing bacterium. Isolated from a deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc, Japan. Deferribacter desulfuricans is an anaerobic, heterotrophic thermophile. It is a strictly anaerobic heterotroph capable of using complex organic compounds, ethanol and various organic acids as energy and carbon sources. Elemental sulfur, nitrate or arsenate was required for growth as an electron acceptor.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1106681*12529718617Island text1.9279720.437139.1521Neighbours21BLASTN106681.gbk
2148706*17408125376Island text1.8258821.286842.4006Neighbours21BLASTN148706.gbk
3212331*23054318213Island text1.6277820.829339.8161Neighbours21BLASTN212331.gbk
4295220*32120025981Island text1.8563719.710640.2729Neighbours21BLASTN+IslandViewer 295220.gbk
5420500*43835817859Island text1.6396621.279239.7734Neighbours21BLASTN+420500.gbk
6441921*46461322693Island text1.8443621.26343.189Neighbours21BLASTN441921.gbk
749295951609923141Island text1.7805619.452241.4545Neighbours21BLASTN+492959.gbk
872446974891224444Island text1.9381521.309840.7338Neighbours21724469.gbk
991389095083436945Island text1.8408519.607226.4344Neighbours21BLASTN+913890.gbk
101001974102327521302Island text1.8504621.444738.5783Neighbours21BLASTN1001974.gbk
111023443*104579422352Island text1.9184122.16841.5124Neighbours21BLASTN+1023443.gbk
121417750*144170823959Island text2.002121.892640.416Neighbours21BLASTN+1417750.gbk
131460142*148574025599Island text1.5356721.729140.0414Neighbours21BLASTN+1460142.gbk
141535071*155369418624Island text1.4951121.552836.3443Neighbours21BLASTN1535071.gbk
151625491164339017900Island text2.1654520.831340.1236Neighbours21BLASTN1625491.gbk
161688400171083222433Island text1.682121.206241.6068Neighbours21BLASTN+1688400.gbk
171767262*179788630625Island text1.8026923.962844.2319Neighbours21BLASTN+1767262.gbk
181812259*183304920791Island text2.4099321.684540.8881Neighbours21BLASTN+1812259.gbk
191841890186807126182Island text1.6013920.628634.9799Neighbours21BLASTN+1841890.gbk
201902397*192421521819Island text1.5972821.613639.1339Neighbours21BLASTN+1902397.gbk
211927424*194879021367Island text1.7001821.876537.3683Neighbours21BLASTN+1927424.gbk
221995546201499619451Island text1.5600221.200141.6646Neighbours21BLASTN1995546.gbk
232117663*213618018518Island text1.8147621.074535.726Neighbours212117663.gbk