Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013926: Aciduliprofundum boonei T469 chromosome, complete genome

NCBI: NC_013926

Host Lineage: Aciduliprofundum boonei; Aciduliprofundum; ; ; Euryarchaeota; Archaea

General Information: Isolation: Mariner hydrothermal vent field in the South Pacific Ocean; Temp: Thermophile; Temp: 70C; Habitat: Deep sea, Hydrothermal vent, Marine. Acidophilic thermophile. Aciduliprofundum boonei is an obligate thermoacidophile growing at pH between 3.3 - 5.8 with an optimum temperature of 70 degrees C. This organism is a chemoorganotroph, using iron and sulfur as electron donors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
171186*9697825793Island text1.9116123.588641.462Neighbours21BLASTN+71186.gbk
2183057*20301819962Island text1.5536720.993437.7391Neighbours21BLASTN+183057.gbk
3289511*31458925079Island text1.4726121.613630.1986Neighbours21289511.gbk
432112234453523414Island text1.4983823.352435.2174Neighbours21321122.gbk
551167453411522442Island text1.5218921.729134.4744Neighbours21BLASTN+511674.gbk
661420664132427119Island text1.6755521.516335.2808Neighbours21BLASTN+614206.gbk
782966585328423620Island text1.4035221.200139.5115Neighbours21BLASTN829665.gbk
8920279*95014429866Island text1.4796820.975235.6225Neighbours21BLASTN920279.gbk
997466899827023603Island text1.6857521.329632.7994Neighbours21974668.gbk
101009718*103374524028Island text1.5434827.633543.1593Neighbours21BLASTNIslandViewer 1009718.gbk
111037681*106077223092Island text1.6721721.26736.728Neighbours21BLASTN1037681.gbk
121166454*118619519742Island text1.6717121.211136.1037Neighbours21BLASTN+1166454.gbk
131205443*122506719625Island text1.4912924.416339.5298Neighbours21BLASTN+1205443.gbk
141270173*128875718585Island text1.5426122.25835.9818Neighbours21+1270173.gbk
151426921*145283525915Island text1.7218820.163136.8498Neighbours21BLASTN+1426921.gbk