Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013923: Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequence

NCBI: NC_013923

Host Lineage: Natrialba magadii; Natrialba; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Isolation: Lake Magadi in Kenya; Temp: Mesophile; Habitat: Fresh water. Natrialba magadii was isolated from Lake Magadi in Kenya. This organism is a extreme halophilic, alkaliphilic member of the Archaea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1458768907843203Island text1.8623929.07829.9942Neighbours11BLASTN+45876.gbk
2363500*38999926500Island text1.8272630.627727.904Neighbours11BLASTN363500.gbk